Beta reduce pins (#1645)

* Update dependency versions and replace np.NaN with np.nan for consistency

* Seems we need numpy<2 since otherwise there are no wheels for the pip install

Author: bsteubing

recipe/meta.yaml

@@ -33,7 +33,7 @@ requirements:
     - loguru>=0.7
     - matrix_utils >=0.5
     - networkx
-    - numpy >=1.23.5, <3
+    - numpy >=1.23.5, <2
     - pandas >=2.2.1
     - py7zr >=0.22.0
     - pyperclip