Change file_name to mesh_name

Author: mark-petersen

ocean/coupling_files_E3SM/create_E3SM_MPAS_coupling_files.ini

@@ -1,9 +1,7 @@
 [main]
 date_string = 181031
-input_file = oUSDEQU300cr3.nc
-MPAS_Tools = /turquoise/usr/projects/climate/kehoch/repos/tools
-mesh_name = mesh12345
-
+mesh_name = oUSDEQU300cr3
+MPAS_Tools = /usr/projects/climate/mpeterse/repos/tools/master/
 
 [initial_condition_ocean]
 enable = true

ocean/coupling_files_E3SM/create_E3SM_MPAS_coupling_files.py

@@ -30,16 +30,16 @@ def initial_condition_ocean(config):
     os.chdir(section)
 
     # obtain configuration settings
-    input_file = config.get('main', 'input_file')
+    mesh_name = config.get('main', 'mesh_name')
 
     # create links
-    make_link('../' + input_file, input_file)
+    make_link('../' + mesh_name+'.nc', mesh_name+'.nc')
 
     # command line execution
     args = ['ncks', '-x', '-v', 'xtime',
             '-O', # overwrite file if it exists
-            input_file,
-            input_file + '_no_xtime.nc'
+            mesh_name+'.nc',
+            mesh_name + '_no_xtime.nc'
             ]
 
     run_command(args)
@@ -87,10 +87,10 @@ def initial_condition_seaice(config):
     os.chdir(section)
 
     # obtain configuration settings
-    input_file = config.get('main', 'input_file')
+    mesh_name = config.get('main', 'mesh_name')
 
     # create links
-    make_link('../' + input_file, input_file)
+    make_link('../' + mesh_name+'.nc', mesh_name+'.nc')
 
     # command line execution
     args = ['ncks', '-x', '-v', 
@@ -101,8 +101,8 @@ def initial_condition_seaice(config):
     vertCoordMovementWeights,boundaryLayerDepth,seaIcePressure,\
     atmosphericPressure,filteredSSHGradientZonal,filteredSSHGradientMeridional', 
     '-O', #Overwrite existing file
-    input_file,
-    'seaice.' + input_file
+    mesh_name+'.nc',
+    'seaice.' + mesh_name+'.nc'
      ]
 
     run_command(args)
@@ -116,23 +116,23 @@ def scrip(config):
     os.chdir(section)
 
     # obtain configuration settings
-    input_file = config.get('main', 'input_file')
+    mesh_name = config.get('main', 'mesh_name')
 
     # create links
-    make_link('../' + input_file, input_file) 
+    make_link('../' + mesh_name+'.nc', mesh_name+'.nc') 
 
     # link to MPAS Tools directory 
     MPAS_Tools = config.get('main', 'MPAS_Tools')
     make_link(MPAS_Tools + 
-    '/mesh_tools/create_SCRIP_files/create_SCRIP_file_from_MPAS_mesh.py', 
+    '/mesh_tools/create_SCRIP_files/create_SCRIP_file_from_MPAS_mesh.py',
     'create_SCRIP_file_from_MPAS_mesh.py')
 
     # get date and mesh name 
     date_string = config.get('main', 'date_string')
     mesh_name = config.get('main', 'mesh_name')
 
     # name scrip files
-    scrip_file = (mesh_name + '.' + date_string + '.nc')
+    scrip_file = (mesh_name + '.nc')
     ocean_scrip_file = ('ocean.' + mesh_name + '.scrip.' + date_string +'.nc')
 
     # command line execution    
@@ -154,7 +154,7 @@ def transects_and_regions(config):
     make_link(MPAS_Tools + 
     '/compiled_mesh_conversion_tools/mesh_tools/mesh_conversion_tools/bin/gr/gnu/MpasMaskCreator.x', 
     'MpasMaskCreator.x')
-    make_link('../scrips/' + mesh_name + '.' + date + '.nc', mesh_name + '.' + date + '.nc')
+    make_link('../scrips/' + mesh_name + '.nc', mesh_name + '.' + date + '.nc')
     make_link(
     '/usr/projects/climate/mpeterse/analysis_input_files/geojson_files/SingleRegionAtlanticWTransportTransects.geojson', 
     'SingleRegionAtlanticWTransportTransects.geojson')