fix strict 404s

Author: jjkoehorst

intro.md

@@ -14,7 +14,7 @@ FAIRDOM-SEEK is a web-based platform for sharing heterogeneous scientific resear
 
 This book is organized into the following sections:
 
-- **[Introduction Tutorial](tutorials/introduction.md)** - Getting started with SEEK basics
+- **[Introduction Tutorial](tutorials/introduction/index.md)** - Getting started with SEEK basics
 - **[Advanced Tutorial](tutorials/advanced.md)** - Power user features and administration
 - **[API Tutorial](tutorials/api.md)** - Programmatic access via the JSON API
 - **Notebooks** - Interactive Jupyter notebook examples

myst.yml

@@ -20,7 +20,6 @@ project:
       children:
       - file: tutorials/advanced.md
       - file: tutorials/api.md
-      - file: notebooks/example.ipynb
     - title: Workshops
       file: workshops/index.md
       children:

tutorials/advanced.md

@@ -188,4 +188,4 @@ Sync with openBIS for raw data:
 
 - Explore the [API Tutorial](api.md) for programmatic access
 - Review [SEEK Administration Guide](https://docs.seek4science.org/tech/administration.html)
-- Join the [FAIRDOM community](https://fair-dom.org/community)
+- Join the [FAIRDOM community](https://fair-dom.org)

tutorials/api.md

@@ -347,5 +347,5 @@ def batch_operation(items, operation, delay=0.5):
 ## Next Steps
 
 - Review the full [API documentation](https://docs.seek4science.org/tech/api/)
-- Explore the [fairdom-seek Python client](https://github.com/seek4science/seekr)
+- Explore the [SEEK API documentation](https://docs.seek4science.org/tech/api/)
 - Check the [JSON:API specification](https://jsonapi.org/)

workshops/index.md

@@ -4,4 +4,4 @@ In this section you will find materials and resources from various workshops rel
 
 ## Available Workshops
 
-- **[Bioindustry 4.0 - Feb 2026](workshops/workshop-bioind4-2026-02)** - A comprehensive workshop geared towards new and existing users of FAIRDOM-SEEK within the Bioindustry 4.0 project.
+- **[Bioindustry 4.0 - Feb 2026](workshop-bioind4-2026-02.md)** - A comprehensive workshop geared towards new and existing users of FAIRDOM-SEEK within the Bioindustry 4.0 project.