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    54 repositories

    • alliance-linkml-flybase

      Public
      Code for export of FlyBase data to the Alliance LinkML-based persistent store.
      Python
      •
      MIT License
      •0•0•0•1•Updated Apr 22, 2026Apr 22, 2026

    • release-database-docker

      Public
      A repository for hosting the release version of a FlyBase database via Docker.
      Shell
      •
      MIT License
      •0•1•0•0•Updated Apr 16, 2026Apr 16, 2026

    • FB_flag_migration

      Public
      scripts and data to handle FlyBase flag data into alliance
      Perl
      •0•0•0•0•Updated Apr 15, 2026Apr 15, 2026

    • harvdev-bulk-reports

      Public
      Generate bulk reports for FlyBase curators, users and collaborators.
      Perl
      •
      MIT License
      •0•0•0•0•Updated Apr 15, 2026Apr 15, 2026

    • flybase-ontology-scripts

      Public
      Scripts for working with FlyBase ontologies, currently mostly for report generation.
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • drosophila-anatomy-developmental-ontology

      Public
      The home of the Drosophila anatomy ontology
      ontologydrosophilaanatomy
      ontologydrosophilaanatomyflybaseobofoundry
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •6•23•16•0•Updated Apr 7, 2026Apr 7, 2026

    • drosophila-developmental-ontology

      Public
      The home of the Drosophila developmental ontology, an ontology of Drosophila melanogaster developmental stages.
      developmentontologydrosophila
      developmentontologydrosophilaflybaseobofoundry
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•5•0•0•Updated Apr 3, 2026Apr 3, 2026

    • flybase-controlled-vocabulary

      Public
      The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
      geneticsontologydrosophila
      geneticsontologydrosophilaphenotypeflybaseobofoundry
      Shell
      •
      Creative Commons Attribution 4.0 International
      •6•10•0•0•Updated Apr 3, 2026Apr 3, 2026

    • drosophila-phenotype-ontology

      Public
      The home of the Drosophila phenotype ontology
      ontologyphenotypeflybase
      ontologyphenotypeflybaseobofoundry
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •3•5•22•0•Updated Apr 3, 2026Apr 3, 2026

    • blast-db-configuration

      Public
      Code for generating the Alliance BLAST DB configuration file
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • harvdev-utils

      Public
      Common Python functions used by FlyBase developers at Harvard.
      Python
      •
      MIT License
      •0•1•0•2•Updated Feb 20, 2026Feb 20, 2026

    • harvdev-peeves-parser

      Public
      Stripped down peeves for testing ONLY. May be destroyed later. To run on tests to get idea of peeves messages.
      Perl
      •0•0•0•0•Updated Feb 9, 2026Feb 9, 2026

    • fuzzy-onions

      Public
      Helper scripts for the FlyBase scRNAseq project
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • harvdev-docker

      Public
      Docker base image for Harvdev applications.
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Nov 11, 2025Nov 11, 2025

    • harvdev-XORT

      Public
      MIT License
      •0•0•0•0•Updated Nov 11, 2025Nov 11, 2025

    • flybase.github.io

      Public
      FlyBase - github.io http://flybase.github.io
      JavaScript
      •
      MIT License
      •0•0•0•19•Updated Jul 2, 2025Jul 2, 2025

    • chado

      Public
      Chado related code for FlyBase
      PLpgSQL
      •
      MIT License
      •1•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • website_automated_testing

      Public
      A suite of automated testing scripts for checking the preview website before release.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • harvdev-proforma-testdb

      Public
      Repository for creation and loading of the proforma test database.
      PLpgSQL
      •
      MIT License
      •0•2•0•0•Updated Apr 22, 2025Apr 22, 2025

    • graphql-server

      Public
      FlyBase GraphQL server (alpha)
      JavaScript
      •
      MIT License
      •0•0•0•2•Updated Mar 27, 2025Mar 27, 2025

    • flybase-component-library

      Public
      TypeScript
      •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • harvdev-perl-proforma-parser

      Public
      Perl proforma parsing code
      Perl
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • cytoscape-widget

      Public
      A React based FlyBase wrapper around Cytoscape for displaying network plots.
      JavaScript
      •
      MIT License
      •1•1•0•1•Updated Oct 4, 2024Oct 4, 2024

    • flybase-robot-plugin

      Public
      A ROBOT plugin for the ontology pipelines at FlyBase
      Java
      •
      MIT License
      •0•0•0•0•Updated May 13, 2024May 13, 2024

    • bulkfile-scripts

      Public
      Scripts useful for working with bulk FlyBase data locally.
      Perl
      •
      MIT License
      •5•3•0•2•Updated Apr 12, 2024Apr 12, 2024

    • biocurator-assistant

      Public
      A Python-based script for processing scientific article data via GPT-4.
      Python
      •
      MIT License
      •0•3•0•0•Updated Feb 12, 2024Feb 12, 2024

    • fast-track-your-paper

      Public
      A tool for expediting curation of published research in genetic databases.
      JavaScript
      •
      MIT License
      •0•1•0•10•Updated Jan 21, 2024Jan 21, 2024

    • harvdev-gene-identifier

      Public
      Python
      •0•1•0•0•Updated Dec 8, 2023Dec 8, 2023

    • alliance-file-browser

      Public
      A repository with a self-contained MongoDB and Mongo Express database viewer for viewing files submitted to the Alliance.
      Shell
      •
      MIT License
      •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

    • CentOS6

      Public
      A repository to compile a Docker image of a CentOS6 operating sytsem.
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2023Oct 3, 2023
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