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    12 repositories

    • navis

      Public
      Python 3 library for Neuron Analysis and Visualization
      Python
      •
      GNU General Public License v3.0
      •36•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • transform_service

      Public
      Small web service to transform fly data
      Python
      •2•2•2•0•Updated Nov 25, 2023Nov 25, 2023

    • fafbseg-py

      Public
      Tools to work with manual and auto-segmented data in FAFB
      Python
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Nov 3, 2023Nov 3, 2023

    • pymaid

      Public
      Collection of Python 3 tools to work with neuron data from CATMAID servers
      Python
      •
      GNU General Public License v3.0
      •11•0•0•0•Updated Oct 27, 2023Oct 27, 2023

    • fafbseg

      Public
      Support functions for analysis of FAFB EM segmentation
      R
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated May 24, 2022May 24, 2022

    • pn_kc

      Public
      Code for the PN-KC paper (Zheng et al. 2020, https://doi.org/10.1101/2020.04.17.047167)
      Jupyter Notebook
      •1•1•0•0•Updated Feb 4, 2022Feb 4, 2022

    • temca2-catmaid

      Public
      Repository for catmaid in a box for the temca2 data products
      Python
      •1•2•0•0•Updated Oct 6, 2020Oct 6, 2020

    • obj_to_ngl

      Public
      Small utility to convert meshes to a fake Neuroglancer mesh layer
      Python
      •0•2•0•0•Updated Oct 1, 2020Oct 1, 2020

    • skeleton_server

      Public
      Hack to view CATMAID skeletons in Neuroglancer
      Python
      •0•0•0•0•Updated Aug 9, 2020Aug 9, 2020

    • CloudVolumeServer

      Public
      Flask application to serve data via CloudVolume
      Python
      •
      BSD 2-Clause "Simplified" License
      •3•0•0•0•Updated May 21, 2020May 21, 2020

    • temca2data

      Public
      Public code for Zheng, Lauritzen et al. (2018)
      R
      •
      MIT License
      •2•15•0•0•Updated Mar 22, 2019Mar 22, 2019

    • catmaid-tools

      Public
      Ultilities for CATMAID, mostly ImgLib2 based
      Java
      •4•0•0•0•Updated Dec 5, 2014Dec 5, 2014
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