Currently, the user needs to manually configure parameters for wrapper classes like AnnDataWrapper:
AnnDataWrapper(
adata_path=zarr_filepath,
obs_embedding_paths=["obsm/X_umap"],
obs_embedding_names=["UMAP"],
obs_set_paths=["obs/CellType"],
obs_set_names=["Cell Type"],
obs_feature_matrix_path="X",
feature_filter_path="var/top_highly_variable"
)
but maybe we could support a static method like
AnnDataWrapper.from_object(adata)
or for SpatialData (depends on #286 )
SpatialDataWrapper.from_object(adata)
Currently, the user needs to manually configure parameters for wrapper classes like AnnDataWrapper:
but maybe we could support a static method like
or for SpatialData (depends on #286 )